PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G105700.1
Common NameB456_007G105700, LOC105802772
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 314aa    MW: 35720.6 Da    PI: 4.7927
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G105700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20121170255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +grW+AeIrdp++   r+r++lg+++taeeAa  +++a+ +++g
  Gorai.007G105700.1 121 KYRGVRQRP-WGRWAAEIRDPTS---RTRVWLGTYDTAEEAALVYDRAAIRIKG 170
                         7********.**********965...4***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-30121178IPR001471AP2/ERF domain
SMARTSM003801.8E-37121187IPR001471AP2/ERF domain
PfamPF008474.6E-14121170IPR001471AP2/ERF domain
PROSITE profilePS5103223.881121178IPR001471AP2/ERF domain
CDDcd000188.86E-34121177No hitNo description
SuperFamilySSF541711.18E-21121178IPR016177DNA-binding domain
PRINTSPR003676.5E-11122133IPR001471AP2/ERF domain
PRINTSPR003676.5E-11144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNPASPFPVK YTEHRTVTNK LVKPSSKWFP MESKAKAPKV VRVCITDGDA TDSSSDECDR  60
VRYQRVKRHV NEIRIQDCST ANFSKPPNKQ NRQVSNKSNH VNIRSKKQQQ QQQQCLSNGM  120
KYRGVRQRPW GRWAAEIRDP TSRTRVWLGT YDTAEEAALV YDRAAIRIKG PDALTNFSKP  180
PVRPPPEIEL EMISGYDSGQ ESQSLCSPTS VLRFQSNEEA ELQTESNDDS LDDMERGWRP  240
VEELAGEPSN LSDEYLLTDP GALCDYFNSD NPVPEPIFFD EMRLPEDSNL ELDISVKLDV  300
DFGSSTWDVD NYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-22117183165ATERF1
3gcc_A7e-22117183165ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490067.10.0PREDICTED: ethylene-responsive transcription factor CRF5-like
TrEMBLA0A0D2TCT70.0A0A0D2TCT7_G
STRINGPOPTR_0002s16900.13e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.12e-57cytokinin response factor 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]